SNP Profiles of LP 1 /41 [POU]   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAACGCCCTTTGTCCTTAAAGCTAACT
1._LP_1_/41_[POU]
CCAACGCCCTTTGTCCTTAAAGCTAACT
2._GC-05-148-4-01
CCAACGCCCTTTGTCCTTAAAGCTAACT
3._GC-05-148-4-01
CCAACGCCCTTTGTCCTTAAAGCTAACT
4._GC-05-148-4-01
CCAACGCCCTTTGTCCTTAAAGCTAACT
5._GC-05-055-2-06
CCAACGCCCTTTGTCCTTAAAGCTAACT
6._GC-05-055-2-06
CCAACGCCCTTTGTCCTTAAAGCTAACT
7._GC-05-055-2-06
CCAACGCCCTTTGTCCTTAAAGCTAACT
8._GC-05-055-2-06
CCAACGCCCTTTGTCCTTAAAGCTAACT
9._GC-05-055-2-06
CCAACGCCCTTTGTCCTTAAAGCTAACT
10._GC-05-148-4-01
CCAACGCCCTTTGTCCTTAAAGCTAACT
11._GC-05-148-4-01
CCAACGCCCTTTGTCCTTAAAGCTAACT
12._LP_1_/41_[POU]
CCAACGCCCTTTGTCCTTAAAGCTAACT
13._LP_1_/41_[POU]
CCAACGCCCTTTGTCCTTAAAGCTAACT
14._LP_1_/41_[POU]
CCAACGCCCTTTGTCCTTAAAGCTAACT
15._LP_1_/41_[POU]
CCAACGCCCTTTGTCCTTAAAGCTAACT
16._LP_1_/41_[POU]
CCAACGCCCTTTGTCCTTAAAGCTAACT
17._LP_1_/41_[POU]
CCAACGCCCTTTGTCCTTAAAGCTAACT
18._LP_1_/41_[POU]
CCAACGCCCTTTGTCCTTAAAGCTAACT
19._LP_1_/41_[POU]
CCAACGCCCTTTGTCCTTAAAGCTAACT
20._RUQ_353
____CG______TT__CC__AG__AA__
21._RUQ_353
__AGCGCT____TT________CCAA__
22._LP_1_/41_[POU]
CTAGCGCTCTCCTTCTCCATAGCCAATT
23._RUQ_353
CTAGCGCTCTCCTTCTCCATAGCCAATT
24._RUQ_353
AGAGCGAGAGGGAA____ATAGGGAAAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAGGCTCTGGGGAACCACGGGTCCACAG
1._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
2._GC-05-148-4-01
AAGGCTCTGGGGAACCACGGGTCCACAG
3._GC-05-148-4-01
AAGGCTCTGGGGAACCACGGGTCCACAG
4._GC-05-148-4-01
AAGGCTCTGGGGAACCACGGGTCCACAG
5._GC-05-055-2-06
AAGGCTCTGGGGAACCACGGGTCCACAG
6._GC-05-055-2-06
AAGGCTCTGGGGAACCACGGGTCCACAG
7._GC-05-055-2-06
AAGGCTCTGGGGAACCACGGGTCCACAG
8._GC-05-055-2-06
AAGGCTCTGGGGAACCACGGGTCCACAG
9._GC-05-055-2-06
AAGGCTCTGGGGAACCACGGGTCCACAG
10._GC-05-148-4-01
AAGGCTCTGGGGAACCACGGGTCCACAG
11._GC-05-148-4-01
AAGGCTCTGGGGAACCACGGGTCCACAG
12._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
13._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
14._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
15._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
16._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
17._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
18._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
19._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
20._RUQ_353
________GGGGAG__CCGG____CC__
21._RUQ_353
______TTGGGG__CTCCGGGG__CCGG
22._LP_1_/41_[POU]
ATGGTTTTGGGGAGCTCCGGGGTTCCGG
23._RUQ_353
ATGGTTTTGGGGAGCTCCGGGGTTCCGG
24._RUQ_353
ATGGAAAACCCC__AGCCGGCC__CC__
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
1._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
2._GC-05-148-4-01
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
3._GC-05-148-4-01
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
4._GC-05-148-4-01
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
5._GC-05-055-2-06
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
6._GC-05-055-2-06
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
7._GC-05-055-2-06
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
8._GC-05-055-2-06
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
9._GC-05-055-2-06
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
10._GC-05-148-4-01
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
11._GC-05-148-4-01
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
12._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
13._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
14._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
15._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
16._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
17._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
18._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
19._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
20._RUQ_353
______AA________CC____X_XX_XX_X
21._RUQ_353
__TTCCAACCCCCTGGCC____X_XX_XX_X
22._LP_1_/41_[POU]
GGTTCCAA__CCCTGGCCAACGX_XX_XX_X
23._RUQ_353
GGTTCCAACCCCCTGGCCAACGX_XX_XX_X
24._RUQ_353
GGTTGGAAGGCCAGCCCCAACGX_XX_XX_X

Input profile: LP_1_/41_[POU]

 
 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5206 1 > FP
 Dapeng Zhang, 2016

1._LP_1_/41_[POU]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5401 2 > FP
 Dapeng Zhang, 2016

2._LP_1_/41_[POU] GC-05-148-4-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._LP_1_/41_[POU] GC-05-148-4-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

4._LP_1_/41_[POU] GC-05-148-4-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

5._LP_1_/41_[POU] GC-05-055-2-06

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

6._LP_1_/41_[POU] GC-05-055-2-06

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

7._LP_1_/41_[POU] GC-05-055-2-06

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

8._LP_1_/41_[POU] GC-05-055-2-06

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

9._LP_1_/41_[POU] GC-05-055-2-06

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

10._LP_1_/41_[POU] GC-05-148-4-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

11._LP_1_/41_[POU] GC-05-148-4-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

12._LP_1_/41_[POU]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5206 2
 Dapeng Zhang, 2016

13._LP_1_/41_[POU]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5206 4
 Dapeng Zhang, 2016

14._LP_1_/41_[POU]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5206 5
 Dapeng Zhang, 2016

15._LP_1_/41_[POU]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5206 3 > FP
 Dapeng Zhang, 2016

16._LP_1_/41_[POU]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5401 3
 Dapeng Zhang, 2016

17._LP_1_/41_[POU]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5401 4
 Dapeng Zhang, 2016

18._LP_1_/41_[POU]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5401 5
 Dapeng Zhang, 2016

19._LP_1_/41_[POU]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5401 1 > FP
 Dapeng Zhang, 2016

20._LP_1_/41_[POU] RUQ_353

73.1 %
13 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Ame
0.170 Cri
0.126 Nac
0.655

21._LP_1_/41_[POU] RUQ_353

58.7 %
23 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._LP_1_/41_[POU]

56.6 %
38 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper C796
 Dapeng Zhang, 2016

23._LP_1_/41_[POU] RUQ_353

56.4 %
39 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

24._LP_1_/41_[POU] RUQ_353

33.8 %
34 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25